species:   Fugra
pid:       PID0969
parent:    FgmilR-7dps-35
paralog:   
locus:     NC_026475.1:6074551-6074635
matures:   ['UGGCUCGACGAUCGUUACUGC', 'ACCCAAGUAUUGGUCCAGUCAGAGCCGGU']
srr:       SRR6516243
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram NC_026475.1:6074551-6074635

12 out of bounds
48 alignments
1 proper strand
1 stranded perfect matches

  **********************                               ****************************  
UCACUACCAACACUGGCUCGACGAUCGUUACUGCUUCGUCGCACCCAAGUAUUGGUCCAGUCAGAGCCGGUCGCGGGUGUCGUGG
.(((((((..(((((((((((((((((.((((((......)).....)))).)))))..))).)))))))).)..))))..))).
-------------UGGCUCGACGAUCGUUACUGC--------------------------------------------------- l=21 a=0 c
------------------------------------------ACCCAAGUAUUGGUCCAGUCAGAGCCGGU-------------- l=29 a=0 c*
----UACCAACACUGGCUCGACGA------------------------------------------------------------- l=20 a=1 ma
---------------------------------------------------------CAGUCAGAGCCGGUCGCGGGUGUCGU-- l=26 a=0 ma*

----UACCAACACUGGCUCGACGA------------------------------------------------------------- l=20 a=1 (ma)

mb-00011
ax-1011011
ku-01
ss-100111011000
fn-001
